FlowSOM (version 1.0.0)

BuildMST: Build Minimal Spanning Tree

Description

Add minimal spanning tree description to the FlowSOM object

Usage

BuildMST(fsom, silent=FALSE, tSNE=FALSE)

Arguments

fsom

FlowSOM object, as generated by BuildSOM

silent

if TRUE, no progress updates will be printed

tSNE

If TRUE, an alternative tSNE layout is computed as well

Value

See Also

BuildSOM

Examples

    # Read from file, build self-organizing map
    fileName <- system.file("extdata","lymphocytes.fcs",package="FlowSOM")
    flowSOM.res <- ReadInput(fileName, compensate=TRUE,transform=TRUE,
                            scale=TRUE)
    flowSOM.res <- BuildSOM(flowSOM.res,colsToUse=c(9,12,14:18))
    
    # Build the Minimal Spanning Tree
    flowSOM.res <- BuildMST(flowSOM.res)