
This file contains the <code>FourCSeq</code> object <code>fc</code>. The reference fragments
have been added and the overlaps of the reference fragments and aligned reads
were counted. 
(See ?addFragments or the vignette of the 'FourCSeq' package for details).


datasets

FourCSeq is an R package dedicated to the analysis of
(multiplexed) 4C sequencing data. The package provides a
pipeline to detect specific interactions between DNA elements
and identify differential interactions between conditions. The
statistical analysis in R starts with individual bam files for
each sample as inputs. To obtain these files, the package
contains a python script (extdata/python/demultiplex.py) to
demultiplex libraries and trim off primer sequences. With a
standard alignment software the required bam files can be then
be generated.

Felix A Klein

FourCSeq

Package analyse 4C sequencing data

fc function

Formal class 'FourC' [package "FourCSeq"]

Format

This file contains the <code>FourCSeq</code> object <code>fc</code>. The reference fragments
have been added and the overlaps of the reference fragments and aligned reads
were counted. 
(See ?addFragments or the vignette of the 'FourCSeq' package for details).

fc: FourC object with counts

Description

Usage

Arguments

Format

Examples