
This file contains the <code>FourCSeq</code> object <code>fcf</code>. For this object
z-scores have been calculated. 
(See ?getZScores or the vignette of the 'FourCSeq' package for details).


datasets

FourCSeq is an R package dedicated to the analysis of
(multiplexed) 4C sequencing data. The package provides a
pipeline to detect specific interactions between DNA elements
and identify differential interactions between conditions. The
statistical analysis in R starts with individual bam files for
each sample as inputs. To obtain these files, the package
contains a python script (extdata/python/demultiplex.py) to
demultiplex libraries and trim off primer sequences. With a
standard alignment software the required bam files can be then
be generated.

Felix A Klein

FourCSeq

Package analyse 4C sequencing data

fcf function

Formal class 'FourC' [package "FourCSeq"]

Format

This file contains the <code>FourCSeq</code> object <code>fcf</code>. For this object
z-scores have been calculated. 
(See ?getZScores or the vignette of the 'FourCSeq' package for details).

fcf: FourC object with z-scores

Description

Usage

Arguments

Format

Examples