getDistAroundVp

A single character string with the selected viewpoint.

<code>DataFrame</code> containing the column data of the <code>FourC</code> object.

vpData

<code>GRanges</code> object containing the row data (fragment data) of
the <code>FourC</code> object.

fragData


<code>getDistAroundVp</code> Add the distance information for a given viewpoint
to the fragment data.


FourCSeq is an R package dedicated to the analysis of
(multiplexed) 4C sequencing data. The package provides a
pipeline to detect specific interactions between DNA elements
and identify differential interactions between conditions. The
statistical analysis in R starts with individual bam files for
each sample as inputs. To obtain these files, the package
contains a python script (extdata/python/demultiplex.py) to
demultiplex libraries and trim off primer sequences. With a
standard alignment software the required bam files can be then
be generated.

Felix A Klein

FourCSeq

Package analyse 4C sequencing data

getDistAroundVp function

<code>getDistAroundVp</code> Add the distance information for a given viewpoint
to the fragment data.

getDistAroundVp: getDistAroundVp

Description

Usage

Arguments

Value

Details

Examples