getNormalizationFactors

object


<code>getNormalizationFactors</code> uses the distance dependency to calculate
normalization factors for each fragment.


FourCSeq is an R package dedicated to the analysis of
(multiplexed) 4C sequencing data. The package provides a
pipeline to detect specific interactions between DNA elements
and identify differential interactions between conditions. The
statistical analysis in R starts with individual bam files for
each sample as inputs. To obtain these files, the package
contains a python script (extdata/python/demultiplex.py) to
demultiplex libraries and trim off primer sequences. With a
standard alignment software the required bam files can be then
be generated.

Felix A Klein

FourCSeq

Package analyse 4C sequencing data

getNormalizationFactors function

<code>getNormalizationFactors</code> uses the distance dependency to calculate
normalization factors for each fragment.

getNormalizationFactors: Get normalization factors for each fragment

Description

Usage

Arguments

Value

See Also

Examples