plotScatter

object

Character vector selecting the assay of the <code>FourC</code> object
for which the correlation between the replicates should be plotted.

assay

Additional arguments passed to <code>smoothScatter</code>.


<code>plotScatter</code> Plot scatter plots for all experiments with replicates.


FourCSeq is an R package dedicated to the analysis of
(multiplexed) 4C sequencing data. The package provides a
pipeline to detect specific interactions between DNA elements
and identify differential interactions between conditions. The
statistical analysis in R starts with individual bam files for
each sample as inputs. To obtain these files, the package
contains a python script (extdata/python/demultiplex.py) to
demultiplex libraries and trim off primer sequences. With a
standard alignment software the required bam files can be then
be generated.

Felix A Klein

FourCSeq

Package analyse 4C sequencing data

plotScatter function

<code>plotScatter</code> Plot scatter plots for all experiments with replicates.

plotScatter: plotScatter

Description

Usage

Arguments

See Also

Examples