plotZScores

object

A character or numeric vector used to subset the columns of <code>object</code>.

cols

Window sizes around the viewpoint for which plots are generated.

plotWindows

Auxiliary <code>GRanges</code> object that contains information about the
viewpoint and closest gene TSS.

controls

Plot parameter passed to the plotting function if

txdb

If set to true each selected column will be plotted in a single plot.

plotSingle


<code>plotZScores</code> generates plots to check the z-score calculation.


FourCSeq is an R package dedicated to the analysis of
(multiplexed) 4C sequencing data. The package provides a
pipeline to detect specific interactions between DNA elements
and identify differential interactions between conditions. The
statistical analysis in R starts with individual bam files for
each sample as inputs. To obtain these files, the package
contains a python script (extdata/python/demultiplex.py) to
demultiplex libraries and trim off primer sequences. With a
standard alignment software the required bam files can be then
be generated.

plotZScores: Plot z-score results.

Description

Usage

Arguments

Details

See Also

Examples