RDocumentation
Moon
Learn R
Search all packages and functions
⚠️
There's a newer version (1.14.0) of this package.
Take me there.
FunciSNP (version 1.10.0)
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Description
FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions.
Copy Link
Copy
Link to current version
Version
Version
1.14.0
1.12.0
1.10.0
1.8.0
Down Chevron
Version
1.10.0
License
GPL-3
Maintainer
Simon G Coetzee
Last Published
January 19th, 2013
Functions in FunciSNP (1.10.0)
Search functions
CorrelatedSNPs-class
Class
"CorrelatedSNPs"
TagSNP-class
Class
"TagSNP"
TSList-class
Class
"TSList"
FunciSNP-package
Functional Identification of SNPs with Phenotype by Coincidence with Chromatin Biofeatures
FunciSNPsummaryOverlaps
Summarizes FunciSNP results by overlaps
FunciSNPplot
FunciSNPplot to visualize YAFSNP summary.
FunciSNPAnnotateSummary
Genomic Annotation of YAFSNPs.
FunciSNPbed
Creates a BED file to view YAFSNPs in your favorite genome browser
getFSNPs
Functional Identification of SNPs with Phenotype by Coincidence with Chromatin Biofeatures
FunciSNPtable
Will output a summary report from FunciSNP at specified Rsquare cut-offs.