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FunciSNP (version 1.10.0)

Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs

Description

FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions.

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Version

Version

1.10.0

License

GPL-3

Maintainer

Simon G Coetzee

Last Published

February 15th, 2017

Functions in FunciSNP (1.10.0)

CorrelatedSNPs-class

Class "CorrelatedSNPs"
TagSNP-class

Class "TagSNP"
TSList-class

Class "TSList"
FunciSNP-package

Functional Identification of SNPs with Phenotype by Coincidence with Chromatin Biofeatures
FunciSNPsummaryOverlaps

Summarizes FunciSNP results by overlaps
FunciSNPplot

FunciSNPplot to visualize YAFSNP summary.
FunciSNPAnnotateSummary

Genomic Annotation of YAFSNPs.
FunciSNPbed

Creates a BED file to view YAFSNPs in your favorite genome browser
getFSNPs

Functional Identification of SNPs with Phenotype by Coincidence with Chromatin Biofeatures
FunciSNPtable

Will output a summary report from FunciSNP at specified Rsquare cut-offs.