FunciSNP (version 1.12.0)

FunciSNPsummaryOverlaps: Summarizes FunciSNP results by overlaps

Description

This will summarize the total number of YAFSNPs identified by the number of biofeatures per tagSNP

Usage

FunciSNPsummaryOverlaps(dat, rsq = 0)

Arguments

dat

FunciSNP data object

rsq

Rsquare value used to filter the summary report

References

SG. Coetzee, SK. Rhie, BP. Berman, GA. Coetzee and H. Noushmehr, FunciSNP: An R/Bioconductor Tool Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs., Nucleic Acids Research, In press, 2012 (doi:10.1093/nar/gks542).

See Also

getFSNPs, FunciSNPplot, FunciSNPAnnotateSummary, FunciSNPtable, FunciSNPbed

Examples

data(glioma);
glioma.anno <- FunciSNPAnnotateSummary(glioma);
FunciSNPsummaryOverlaps(glioma.anno, rsq = 0.2);