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FunciSNP (version 1.12.0)

Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs

Description

FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions.

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Version

Version

1.12.0

License

GPL-3

Maintainer

Simon G Coetzee

Last Published

February 15th, 2017

Functions in FunciSNP (1.12.0)

CorrelatedSNPs-class

Class "CorrelatedSNPs"
FunciSNP-package

Functional Identification of SNPs with Phenotype by Coincidence with Chromatin Biofeatures
FunciSNPAnnotateSummary

Genomic Annotation of YAFSNPs.
FunciSNPbed

Creates a BED file to view YAFSNPs in your favorite genome browser
FunciSNPtable

Will output a summary report from FunciSNP at specified Rsquare cut-offs.
getFSNPs

Functional Identification of SNPs with Phenotype by Coincidence with Chromatin Biofeatures
TagSNP-class

Class "TagSNP"
TSList-class

Class "TSList"
FunciSNPplot

FunciSNPplot to visualize YAFSNP summary.
FunciSNPsummaryOverlaps

Summarizes FunciSNP results by overlaps