RDocumentation
Moon
Learn R
Search all packages and functions
⚠️
There's a newer version (1.14.0) of this package.
Take me there.
FunciSNP (version 1.8.0)
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Description
FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions.
Copy Link
Copy
Link to current version
Version
Version
1.14.0
1.12.0
1.10.0
1.8.0
Down Chevron
Version
1.8.0
License
GPL-3
Maintainer
Simon G Coetzee
Last Published
January 19th, 2013
Functions in FunciSNP (1.8.0)
Search functions
CorrelatedSNPs-class
Class
"CorrelatedSNPs"
FunciSNPAnnotateSummary
Genomic Annotation of YAFSNPs.
FunciSNPbed
Creates a BED file to view YAFSNPs in your favorite genome browser
FunciSNP-package
Functional Identification of SNPs with Phenotype by Coincidence with Chromatin Biofeatures
TagSNP-class
Class
"TagSNP"
TSList-class
Class
"TSList"
FunciSNPtable
Will output a summary report from FunciSNP at specified Rsquare cut-offs.
getFSNPs
Functional Identification of SNPs with Phenotype by Coincidence with Chromatin Biofeatures
FunciSNPplot
FunciSNPplot to visualize YAFSNP summary.
FunciSNPsummaryOverlaps
Summarizes FunciSNP results by overlaps