weight.gsets.test

Given a gene functional association network, the gene weights in a list of pathways are assigned, with genes not present in the network assigned basic weights.

A network-based gene weighting algorithm for pathway enrichment analysis, using either RNA-seq or microarray data. Zhaoyuan Fang, Weidong Tian and Hongbin Ji (2012) <doi:10.1038/cr.2011.149>.

Zhaoyuan Fang

GANPA

Gene Association Network-Based Pathway Analysis (GANPA)

weight.gsets.test function

<dl> <dt>isets</dt>
<dd>A gene association network stored in a list.</dd> <dt>gsets</dt>
<dd>Pathways stored in the form of a list of gene sets.</dd></dl>

Arguments

Zhaoyuan Fang, Weidong Tian and Hongbin Ji

Author

Weight genes in pathways with a gene association network — weight.gsets.test

<dl>

 <dt>isets</dt>
<dd>A gene association network stored in a list.</dd>

 <dt>gsets</dt>
<dd>Pathways stored in the form of a list of gene sets.</dd>

</dl>

weight.gsets.test: Weight genes in pathways with a gene association network

Description

Usage

Value

Arguments

Author

References

See Also