plot.GEInfo

A fitted "GEInfo" model object for which prediction is desired.

Names of all G variables. Default is NULL.

Gname

Names of all E variables. Default is NULL.

Ename

Plot the heatmap for all E variables, identified G variables, and their G-E interactions from a fitted (GEInfo) model.

Realize three approaches for Gene-Environment interaction analysis. All of them adopt Sparse Group Minimax Concave Penalty to identify important G variables and G-E interactions, and simultaneously respect the hierarchy between main G and G-E interaction effects. All the three approaches are available for Linear, Logistic, and Poisson regression. Also realize to mine and construct prior information for G variables and G-E interactions.

plot.GEInfo: Heatmap of the identification results

Description

Usage

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Value