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GEInfo (version 1.0)

Gene-Environment Interaction Analysis Incorporating Prior Information

Description

Realize three approaches for Gene-Environment interaction analysis. All of them adopt Sparse Group Minimax Concave Penalty to identify important G variables and G-E interactions, and simultaneously respect the hierarchy between main G and G-E interaction effects. All the three approaches are available for Linear, Logistic, and Poisson regression. Also realize to mine and construct prior information for G variables and G-E interactions.

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Version

Install

install.packages('GEInfo')

Monthly Downloads

186

Version

1.0

License

GPL

Maintainer

Xiaoyan Wang

Last Published

January 10th, 2022

Functions in GEInfo (1.0)

PubMed.search

Search prior counts for G variables and G-E interactions
plot.GEInfo

Heatmap of the identification results
predict.GEInfo

Make Predictions for a fitted model
CGEInfo

CGEInfo and GEsgMCP approaches with fixed tunings
plot.PubMed

Visualize the prior information
cv.CGEInfo

Cross-validation for CGEInfo
GEInfo

GEInfo approach with fixed tunings
TypeS

Construct Type_S prior information
matW

Calculate matrix W
cv.GEInfo

Cross-validation for GEInfo
coef.GEInfo

Extract coefficients from a fitted object