plot.PubMed

A 'PubMed' object for which visualization is desired.

A numeric vector of length p, including prior counts for all G variables. Default is NULL.

G.count

A numeric matrix of dimensions p*q, including prior counts for G-E interactions. Default is NULL.

GE.count

Visualize the prior counts for G variables and G-E interactions. It reports a bar chart for the top 40 G variables by prior count and
 a boxplot of prior counts for all G variables. For each E variables, it draws a bar chart for the corresponding top 20 G-E interactions by prior count.

Realize three approaches for Gene-Environment interaction analysis. All of them adopt Sparse Group Minimax Concave Penalty to identify important G variables and G-E interactions, and simultaneously respect the hierarchy between main G and G-E interaction effects. All the three approaches are available for Linear, Logistic, and Poisson regression. Also realize to mine and construct prior information for G variables and G-E interactions.

plot.PubMed: Visualize the prior information

Description

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