Learn R Programming

Installation

To install from Bioconductor, use the following code:

source("http://bioconductor.org/biocLite.R")
biocLite("GEOquery")

To install directly from github:

library(devtools)
install_github('GEOquery','seandavi')

Usage

See the full vignette in rmarkdown or visit Bioconductor for details:

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Version

Version

2.38.4

License

GPL-2

Issues

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Maintainer

Last Published

February 15th, 2017

Functions in GEOquery (2.38.4)

Generic functions

Generic functions for GEOquery
GEOData-class

Class "GEOData"
getGEOSuppFiles

Get Supplemental Files from GEO
GSE-class

Class "GSE"
GDS-class

Class "GDS"
gunzip

Gunzip a file
GEODataTable-class

Class "GEODataTable"
GSM-class

Class "GSM"
getGEOfile

Download a file from GEO soft file to the local machine
getGSEDataTables

Get GSE data tables from GEO into R data structures.
getGEO

Get a GEO object from NCBI or file
parseGEO

Parse GEO text
Converting

Convert a GDS data structure to a BioConductor data structure
GPL-class

Class "GPL"