GSE-class

GPLList,GSE-method

GSMList,GSE-method

Meta,GSE-method

classes

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data.  Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data.  GEOquery is the bridge between GEO and BioConductor.

Sean Davis

GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

GSE-class function

Objects can be created by calls of the form <code>new("GSE", ...)</code>.

Objects from the Class

<dl>
    <dt><code>header</code>:</dt><dd>Object of class <code>"list"</code> containing
      metadata for the series</dd> <dt><code>gsms</code>:</dt><dd>Object of class <code>"list"</code> containing a list
      of items of class <code>GSM</code> associated with the series</dd> <dt><code>gpls</code>:</dt><dd>Object of class <code>"list"</code> containing a list
      of items of class <code>GPL</code> associate with the series</dd> </dl> 

Slots

<dl>
    <dt>GPLList</dt><dd><code>signature(object = "GSE")</code>: returns a list,
      each item of the list being a <code>GPL</code> object</dd> <dt>GSMList</dt><dd><code>signature(object = "GSE")</code>: returns a list,
      each item of the list being a <code>GSM</code> object</dd> <dt>Meta</dt><dd><code>signature(object = "GSE")</code>: returns a list, the
      metadata associated with the GSE </dd> </dl> 

GSE-class: Class "GSE"

Description

Arguments

Objects from the Class

Slots

Methods

See Also