SNP368annot.data:
Annotation data of 368SNPs
Description
The annotation data of 368SNPs are used to construct SNP distribution in gene elements (coding region, introne,UTR, etc). The data contain 12 vectors or variables but only Symbol and function_unit are used by ucscannot.R to build SNP distribution in gene elements.
Usage
data("SNP368annot.data")
Value
A dataset with 1053 rows and 6 columns for results of SNP annotation analysis. See format above.
Format
A data frame with 1053 observations on the following 6 variables.
SNP- a string vector
Allele- a string vector
Strand- a numeric vector
Symbol- a string vector
Gene- a string vector
function_unit- a string vector
Source
http://csg.sph.umich.edu//abecasis/public/lipids2013/ Details
SNP368annot.data were obtained by performing mktable with PV=5x10e-08,Pc=Pd=0.979 on lpd.data and cad.data and SNP tools. SNP368annot.data provides an practical example for constructing distribution of SNPs in gene elements. Note that function_units are gene elements.
References
http://snp-nexus.org/test/snpnexus_19427/