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GMRP (version 1.0.0)

GWAS-based Mendelian Randomization and Path Analyses

Description

Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.

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Version

Version

1.0.0

License

GPL (>= 2)

Maintainer

YuanDe Tan

Last Published

February 15th, 2017

Functions in GMRP (1.0.0)

cad.data

boldGWAS Meta-analyzed Data of Coronary Artery Disease
beta.data

Beta Data Of SNP Regressed on Causal Variables and Disease
pathdiagram2

Two-level Nested Pathdiagram
SNP358.data

Data of 358 SNPs
SNP368annot.data

Annotation data of 368SNPs
snpposit

SNP Position Annotation
path

Path Analysis
mktable

Selection of SNPs and Creation of A Standard Table for Mendelian Randomization and Path Analyses
fmerg

Merge Two GWAS Result Data Sheets
GMRP-package

GWAS-based Mendelian Randomization Path Analysis
chrp

Split hg19
ucscannot

Functional Annotation of SNPs Chosen
lpd.data

GWAS Meta-analyzed Data of Lipoprotein Cholesterols
pathdiagram

Path Diagram