GMRP (version 1.0.0)

cad.data: boldGWAS Meta-analyzed Data of Coronary Artery Disease

Description

cad.data are a matrix dataset consisting of 12 variables such as SNPID, SNP position on chromosomes, allele and alternative allele, allelic frequencies and 1069 SNPs.

Usage

data("cad.data")

Value

A data sheet consisting of 1609 rows(SNPs) and 12 columns(character vectors such as SNPID and allele, numeric vector such as allele frequency and beta coefficient. See data format above).

Format

A data frame with 1609 observations on the following 12 variables.

SNP

a character vector

chr_pos_b36

a character vector

reference_allele

a character vector

other_allele

a character vector

ref_allele_frequency

a numeric vector

pvalue

a numeric vector

het_pvalue

a numeric vector

log_odds

a numeric vector

log_odds_se

a numeric vector

N_case

a numeric vector

N_control

a numeric vector

model

a character vector

Source

http://www.cardiogramplusc4d.org/downloads/

Details

cad.data, also called CARDIoGRAM GWAS, are a meta-analyzed GWAS data from GWAS studies of European descent imputed to HapMap2 involving 22,233 cases and 64,762 controls. The data were downloaded from the following website.

References

Schunkert H, Konig IR, Kathiresan S, Reilly MP, Assimes TL, Holm H et al. Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. Nat Genet. 2011 43: 333-338.

Examples

data(cad.data)
## maybe str(cad.data) ; plot(cad.data) ...