GOCompare

GOCompare-package

GOCompare is an R package used to compare Gene Ontology (GO) term enrichment results between two species.
It facilitates comparative functional genomics by allowing researchers to analyze similarities and differences
in enriched GO categories between orthologous gene sets.

package

Supports the assessment of functional enrichment analyses obtained for several lists of genes and provides a workflow to analyze them between two species via weighted graphs. Methods are described in Sosa et al. (2023) <doi:10.1016/j.ygeno.2022.110528>.

Chrystian Camilo Sosa

Comprehensive GO Terms Comparison Between Species

Diana Carolina Clavijo-Buriticá

Mauricio Alberto Quimbaya

Maria Victoria Diaz

Camila Riccio Rengifo

Nicolas López-Rozo

Victor Hugo García Merchán

Arlen James Mosquera

Andrés Álvarez

GOCompare-package function

Maintainer: Chrystian Camilo Sosa <a href="/link/ccsosaa%40javerianacali.edu.co?package=GOCompare&version=1.0.2.2" data-mini-rdoc="GOCompare::ccsosaa@javerianacali.edu.co">ccsosaa@javerianacali.edu.co</a> (<a href="https://orcid.org/0000-0002-3734-3248">ORCID</a>) [copyright holder]
Authors:<ul>
<li>Diana Carolina Clavijo-Buriticá <a href="/link/diana.clavijo%40javerianacali.edu.co?package=GOCompare&version=1.0.2.2" data-mini-rdoc="GOCompare::diana.clavijo@javerianacali.edu.co">diana.clavijo@javerianacali.edu.co</a></li>
<li>Mauricio Alberto Quimbaya <a href="/link/maquimbaya%40javerianacali.edu.co?package=GOCompare&version=1.0.2.2" data-mini-rdoc="GOCompare::maquimbaya@javerianacali.edu.co">maquimbaya@javerianacali.edu.co</a></li>
<li>Victor Hugo García Merchán <a href="/link/victorhgarcia%40uniquindio.edu.co?package=GOCompare&version=1.0.2.2" data-mini-rdoc="GOCompare::victorhgarcia@uniquindio.edu.co">victorhgarcia@uniquindio.edu.co</a> [contributor]</li>
</ul>Other contributors:<ul>
<li>Maria Victoria Diaz <a href="/link/m.v.diaz%40cgiar.org?package=GOCompare&version=1.0.2.2" data-mini-rdoc="GOCompare::m.v.diaz@cgiar.org">m.v.diaz@cgiar.org</a> [contributor]</li>
<li>Camila Riccio Rengifo <a href="/link/camila.riccio%40javerianacali.edu.co?package=GOCompare&version=1.0.2.2" data-mini-rdoc="GOCompare::camila.riccio@javerianacali.edu.co">camila.riccio@javerianacali.edu.co</a> [contributor]</li>
<li>Nicolas López-Rozo <a href="/link/nicolaslopez%40javerianacali.edu.co?package=GOCompare&version=1.0.2.2" data-mini-rdoc="GOCompare::nicolaslopez@javerianacali.edu.co">nicolaslopez@javerianacali.edu.co</a> [contributor]</li>
<li>Arlen James Mosquera <a href="/link/arlen22%40javerianacali.edu.co?package=GOCompare&version=1.0.2.2" data-mini-rdoc="GOCompare::arlen22@javerianacali.edu.co">arlen22@javerianacali.edu.co</a> [contributor]</li>
<li>Andrés Álvarez <a href="/link/andresalvarez01%40javerianacali.edu.co?package=GOCompare&version=1.0.2.2" data-mini-rdoc="GOCompare::andresalvarez01@javerianacali.edu.co">andresalvarez01@javerianacali.edu.co</a> [contributor]</li>
</ul>

Author

GOCompare: An R package to compare GO terms of gene lists (categories) and their orthologs — GOCompare-package

Maintainer: Chrystian Camilo Sosa <a href='mailto:ccsosaa@javerianacali.edu.co'>ccsosaa@javerianacali.edu.co</a> (<a href='https://orcid.org/0000-0002-3734-3248'>ORCID</a>) [copyright holder]
Authors:<ul>
<li>Diana Carolina Clavijo-Buriticá <a href='mailto:diana.clavijo@javerianacali.edu.co'>diana.clavijo@javerianacali.edu.co</a></li>
<li>Mauricio Alberto Quimbaya <a href='mailto:maquimbaya@javerianacali.edu.co'>maquimbaya@javerianacali.edu.co</a></li>
<li>Victor Hugo García Merchán <a href='mailto:victorhgarcia@uniquindio.edu.co'>victorhgarcia@uniquindio.edu.co</a> [contributor]</li>
</ul>

Other contributors:<ul>
<li>Maria Victoria Diaz <a href='mailto:m.v.diaz@cgiar.org'>m.v.diaz@cgiar.org</a> [contributor]</li>
<li>Camila Riccio Rengifo <a href='mailto:camila.riccio@javerianacali.edu.co'>camila.riccio@javerianacali.edu.co</a> [contributor]</li>
<li>Nicolas López-Rozo <a href='mailto:nicolaslopez@javerianacali.edu.co'>nicolaslopez@javerianacali.edu.co</a> [contributor]</li>
<li>Arlen James Mosquera <a href='mailto:arlen22@javerianacali.edu.co'>arlen22@javerianacali.edu.co</a> [contributor]</li>
<li>Andrés Álvarez <a href='mailto:andresalvarez01@javerianacali.edu.co'>andresalvarez01@javerianacali.edu.co</a> [contributor]</li>
</ul>

GOCompare: An R package to compare GO terms of gene lists (categories) and their orthologs

GOCompare-package: GOCompare: An R package to compare GO terms of gene lists (categories) and their orthologs

Description

Arguments

Author

Details

See Also