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GOCompare (version 1.0.2.2)

Comprehensive GO Terms Comparison Between Species

Description

Supports the assessment of functional enrichment analyses obtained for several lists of genes and provides a workflow to analyze them between two species via weighted graphs. Methods are described in Sosa et al. (2023) .

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Version

Install

install.packages('GOCompare')

Monthly Downloads

251

Version

1.0.2.2

License

GPL (>= 3)

Issues

1

Pull Requests

0

Stars

8

Forks

1

Maintainer

Chrystian Camilo Sosa

Last Published

June 25th, 2025

Functions in GOCompare (1.0.2.2)

evaluateCAT_species

Comprehensive comparison between species using categories and Pearson's Chi-squared Tests
H_sapiens_compress

H. sapiens functional enrichment analysis results for "AID","DCE","RCD","SPS" cancer-hallmarks
comparison_ex_compress_CH

Functional enrichment analysis comparison between H. sapiens and A. thaliana for "DCE", and "RCD" cancer-hallmarks. This dataset contains 10 GO terms per category to allow a fast run of the function graph_two_GOspecies.
evaluateGO_species

Comprehensive comparison between species using GO terms and Pearson's Chi-squared Tests
compareGOspecies

Visual representation for the results of functional enrichment analysis to compare two species and a series of categories
mostFrequentGOs

Most frequent GO terms among groups for a data.frame
graphGOspecies

Undirected network representation for the results of functional enrichment analysis for one species
graph_two_GOspecies

Undirected network representation for the results of functional enrichment analysis to compare two species and a series of categories
GOCompare-package

GOCompare: An R package to compare GO terms of gene lists (categories) and their orthologs
H_sapiens

H. sapiens functional enrichment analysis of 5494 genes related to cancer-hallmarks
A_thaliana

A thaliana functional enrichment analysis of 2224 ortholog genes related to cancer-hallmarks
A_thaliana_compress

A thaliana functional enrichment analysis results for "AID","DCE","RCD","SPS" cancer-hallmarks
comparison_ex_compress

Functional enrichment analysis comparison between H. sapiens and A. thaliana for "AID","DCE","RCD","SPS" cancer-hallmarks