comparison_ex_compress

This dataset is the results of running the compareGOspecies species and
 it is composed of four slots:<dl>
 <dt>graphics</dt>
<dd>PCoA graphics</dd> <dt>distance</dt>
<dd>numeric: Jaccard distance matrix</dd> <dt>shared_GO_list</dt>
<dd>data.frame with shared GO terms between species</dd> <dt>unique_GO_list</dt>
<dd>data.frame with unique GO terms and their belonging two each species</dd>
</dl>

datasets

Supports the assessment of functional enrichment analyses obtained for several lists of genes and provides a workflow to analyze them between two species via weighted graphs. Methods are described in Sosa et al. (2023) <doi:10.1016/j.ygeno.2022.110528>.

Chrystian Camilo Sosa

GOCompare

Comprehensive GO Terms Comparison Between Species

Diana Carolina Clavijo-Buriticá

Mauricio Alberto Quimbaya

Maria Victoria Diaz

Camila Riccio Rengifo

Nicolas López-Rozo

Victor Hugo García Merchán

Arlen James Mosquera

Andrés Álvarez

comparison_ex_compress function

An object of class <code>list</code> of length 4.

Format

This dataset is the results of running the compareGOspecies species and
 it is composed of four slots:<dl>
 <dt>graphics</dt>
<dd>PCoA graphics</dd>

 <dt>distance</dt>
<dd>numeric: Jaccard distance matrix</dd>

 <dt>shared_GO_list</dt>
<dd>data.frame with shared GO terms between species</dd>

 <dt>unique_GO_list</dt>
<dd>data.frame with unique GO terms and their belonging two each species</dd>


</dl>

Functional enrichment analysis comparison between H. sapiens and A. thaliana
for "AID","DCE","RCD","SPS" cancer-hallmarks — comparison_ex_compress

Functional enrichment analysis comparison between H. sapiens and A. thaliana
for "AID","DCE","RCD","SPS" cancer-hallmarks

comparison_ex_compress: Functional enrichment analysis comparison between H. sapiens and A. thaliana for "AID","DCE","RCD","SPS" cancer-hallmarks

Description

Usage

Arguments

Format

References