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GOFunction (version 1.20.0)

GO-function: deriving biologcially relevant functions from statistically significant functions

Description

The GO-function package provides a tool to address the redundancy that result from the GO structure or multiple annotation genes and derive biologically relevant functions from the statistically significant functions based on some intuitive assumption and statistical testing.

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Version

Version

1.20.0

License

GPL (>= 2)

Maintainer

Jing Wang

Last Published

February 15th, 2017

Functions in GOFunction (1.20.0)

refGenes

Colon cancer background genes
showSigNodes

Drawing the GO DAG structure of statistically significant terms
GOFunction-package

GO-function: deriving biologically relevant functions from statistically significant functions
GOFunction

main function of the GO-function package
interestGenes

Colon cancer differentially expressed genes
enrichmentFunction

Identification of statistically significant GO terms
globalRedundancy

Treating for glocal redundancy between GO terms which share multiple function genes but have no ancient-offspring relationship
localRedundancy

Treating for local redundancy between GO terms with ancient-offspring relationship
createGODAG

Creation of GO DAG stucture for statistically significant GO terms