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GOstats (version 2.32.0)

Tools for manipulating GO and microarrays.

Description

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

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Version

2.32.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in GOstats (2.32.0)

GOstats-package

Tools for manipulating GO and microarrays.

hyperGTest

Hypergeometric Tests for GO term association

shortestPath

Shortest Path Analysis

simLL

Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs.

GOHyperGResult-class

Class "GOHyperGResult"

oneGOGraph

Construct the GO graph given a set of leaves.

GOstats-defunct

Defunct Functions in GOstats Package

probeSetSummary

Summarize Probe Sets Associated with a hyperGTest Result

Ndists

Distance matrices for the BCR/ABL and NEG subgroups.

notConn

Find genes that are not connected to the others.

A function to compute a correlation based graph from Gene Expression Data

compGdist

A function to compute the distance between pairs of nodes in a graph.

termGraphs

Extraction and Plotting of GO Terms from a GOHyperGResult Object

triadCensus

Triad Functions