GOstats (version 2.38.1)

Tools for manipulating GO and microarrays.

Description

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Copy Link

Version

2.38.1

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in GOstats (2.38.1)

GOstats-defunct

Defunct Functions in GOstats Package

GOHyperGResult-class

Class "GOHyperGResult"

GOstats-package

Tools for manipulating GO and microarrays.

hyperGTest

Hypergeometric Tests for GO term association

termGraphs

Extraction and Plotting of GO Terms from a GOHyperGResult Object

triadCensus

Triad Functions

compCorrGraph

A function to compute a correlation based graph from Gene Expression Data

compGdist

A function to compute the distance between pairs of nodes in a graph.

simLL

Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs.

shortestPath

Shortest Path Analysis

Distance matrices for the BCR/ABL and NEG subgroups.

notConn

Find genes that are not connected to the others.

oneGOGraph

Construct the GO graph given a set of leaves.

probeSetSummary

Summarize Probe Sets Associated with a hyperGTest Result