GOstats v2.38.1

Tools for manipulating GO and microarrays.

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Functions in GOstats

 Name Description GOstats-defunct Defunct Functions in GOstats Package GOHyperGResult-class Class "GOHyperGResult" GOstats-package Tools for manipulating GO and microarrays. hyperGTest Hypergeometric Tests for GO term association termGraphs Extraction and Plotting of GO Terms from a GOHyperGResult Object triadCensus Triad Functions compCorrGraph A function to compute a correlation based graph from Gene Expression Data compGdist A function to compute the distance between pairs of nodes in a graph. simLL Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs. shortestPath Shortest Path Analysis makeGOGraph Construct a GO Graph idx2dimnames Index to Dimnames Ndists Distance matrices for the BCR/ABL and NEG subgroups. notConn Find genes that are not connected to the others. oneGOGraph Construct the GO graph given a set of leaves. probeSetSummary Summarize Probe Sets Associated with a hyperGTest Result No Results!