GOstats v2.38.1

by Bioconductor Package Maintainer

Tools for manipulating GO and microarrays.

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Functions in GOstats

Name	Description
GOstats-defunct	Defunct Functions in GOstats Package
GOHyperGResult-class	Class "GOHyperGResult"
GOstats-package	Tools for manipulating GO and microarrays.
hyperGTest	Hypergeometric Tests for GO term association
termGraphs	Extraction and Plotting of GO Terms from a GOHyperGResult Object
triadCensus	Triad Functions
compCorrGraph	A function to compute a correlation based graph from Gene Expression Data
compGdist	A function to compute the distance between pairs of nodes in a graph.
simLL	Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs.
shortestPath	Shortest Path Analysis
makeGOGraph	Construct a GO Graph
idx2dimnames	Index to Dimnames
Ndists	Distance matrices for the BCR/ABL and NEG subgroups.
notConn	Find genes that are not connected to the others.
oneGOGraph	Construct the GO graph given a set of leaves.
probeSetSummary	Summarize Probe Sets Associated with a hyperGTest Result
No Results!

Last year downloads

Details

License	Artistic-2.0
Collate	zzz.R AllClasses.R AllGenerics.R hyperGTest-methods.R GOHyperGResult-accessors.R GOgraph.R GOhyptest.R hyperGtable.R shortestPath.R triad.R
biocViews	Annotation, GO, MultipleComparison, GeneExpression, Microarray, Pathways, GeneSetEnrichment, GraphAndNetwork

suggests	ALL , BiocGenerics , genefilter , geneplotter , GSEABase , hgu95av2.db (>= 1.13.0) , multtest , org.Hs.eg.db , RColorBrewer , Rgraphviz , RUnit , SparseM , xtable
imports	annotate (>= 1.13.2) , AnnotationDbi (>= 0.0.89) , AnnotationForge , GO.db (>= 1.13.0) , methods , RBGL , stats , stats4
depends	Biobase (>= 1.15.29) , Category (>= 2.3.26) , graph , R (>= 2.10)
Contributors	R. Gentleman, S. Falcon

Include our badge in your README

`[![Rdoc](http://www.rdocumentation.org/badges/version/GOstats)](http://www.rdocumentation.org/packages/GOstats)`