# GOstats v2.38.1

## Tools for manipulating GO and microarrays.

A set of tools for interacting with GO and microarray
data. A variety of basic manipulation tools for graphs,
hypothesis testing and other simple calculations.

## Functions in GOstats

Name | Description | |

GOstats-defunct | Defunct Functions in GOstats Package | |

GOHyperGResult-class | Class "GOHyperGResult" | |

GOstats-package | Tools for manipulating GO and microarrays. | |

hyperGTest | Hypergeometric Tests for GO term association | |

termGraphs | Extraction and Plotting of GO Terms from a GOHyperGResult Object | |

triadCensus | Triad Functions | |

compCorrGraph | A function to compute a correlation based graph from Gene Expression Data | |

compGdist | A function to compute the distance between pairs of nodes in a graph. | |

simLL | Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs. | |

shortestPath | Shortest Path Analysis | |

makeGOGraph | Construct a GO Graph | |

idx2dimnames | Index to Dimnames | |

Ndists | Distance matrices for the BCR/ABL and NEG subgroups. | |

notConn | Find genes that are not connected to the others. | |

oneGOGraph | Construct the GO graph given a set of leaves. | |

probeSetSummary | Summarize Probe Sets Associated with a hyperGTest Result | |

No Results! |

## Last year downloads

## Details

License | Artistic-2.0 |

Collate | zzz.R AllClasses.R AllGenerics.R hyperGTest-methods.R GOHyperGResult-accessors.R GOgraph.R GOhyptest.R hyperGtable.R shortestPath.R triad.R |

biocViews | Annotation, GO, MultipleComparison, GeneExpression, Microarray, Pathways, GeneSetEnrichment, GraphAndNetwork |

suggests | ALL , BiocGenerics , genefilter , geneplotter , GSEABase , hgu95av2.db (>= 1.13.0) , multtest , org.Hs.eg.db , RColorBrewer , Rgraphviz , RUnit , SparseM , xtable |

imports | annotate (>= 1.13.2) , AnnotationDbi (>= 0.0.89) , AnnotationForge , GO.db (>= 1.13.0) , methods , RBGL , stats , stats4 |

depends | Biobase (>= 1.15.29) , Category (>= 2.3.26) , graph , R (>= 2.10) |

Contributors | R. Gentleman, S. Falcon |

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