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GOstats (version 2.38.0)

Tools for manipulating GO and microarrays.

Description

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

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Version

2.38.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in GOstats (2.38.0)

termGraphs

Extraction and Plotting of GO Terms from a GOHyperGResult Object

shortestPath

Shortest Path Analysis

idx2dimnames

Index to Dimnames

GOstats-package

Tools for manipulating GO and microarrays.

notConn

Find genes that are not connected to the others.

compGdist

A function to compute the distance between pairs of nodes in a graph.

compCorrGraph

A function to compute a correlation based graph from Gene Expression Data

Ndists

Distance matrices for the BCR/ABL and NEG subgroups.

GOstats-defunct

Defunct Functions in GOstats Package

oneGOGraph

Construct the GO graph given a set of leaves.

simLL

Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs.

probeSetSummary

Summarize Probe Sets Associated with a hyperGTest Result

GOHyperGResult-class

Class "GOHyperGResult"

Hypergeometric Tests for GO term association