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GSEABase (version 1.28.0)

Gene set enrichment data structures and methods

Description

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

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Version

Version

1.28.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in GSEABase (1.28.0)

GeneColorSet-class

Class "GeneColorSet"
CollectionType-class

Class "CollectionType"
CollectionType

Collection Type Class Constructors
GeneSetCollection-methods

Methods to construct GeneSetCollection instances
import/export

Read and write gene sets from Broad or GMT formats
details-methods

Methods for Displaying Detailed GeneSet Information
GeneSet

Methods to construct GeneSet instances
GeneSetCollection-class

Class "GeneSetCollection"
goSlim-methods

Methods for Function goSlim in Package `GSEABase'
getOBOCollection

Read OBO-specified Gene Ontology Collections
mapIdentifiers-methods

Methods for Function mapIdentifiers in Package `GSEABase'
OBOCollection-class

Class "OBOCollection"
GeneIdentifierType

Gene Identifier Class Constructors
GeneSet-class

Class "GeneSet"
incidence-methods

Methods for Constructing Incidence Matricies Between GeneSets
GSEABase-package

Gene set enrichment data structures and methods
GeneColorSet

Methods to Construct "GeneColorSet" Instances
GeneIdentifierType-class

Class "GeneIdentifierType"