GSNA (version 0.1.4.2)

extract_david_GSC: extract_david_GSC

Description

extract_david_GSC

Usage

extract_david_GSC(
  data,
  genes.field = "Genes",
  term.field = "Term",
  del = "\\s*,\\s*"
)

Value

A gene set collection as a list of gene set vectors, where the gene set names correspond to Terms and the vectors contain gene symbols corresponding to the genes listed in genes.field.

Arguments

data

A data.frame containing DAVID pathways data (without duplicates).

genes.field

The name of the field containing the lists of genes for each gene set (default: "Genes").

term.field

The name of the field containing the ID for each gene set (default: "Term").

del

A pattern specifying the delimiter for the genes in genes.field. (default: "\\s*,\\s*")

See Also

• gsnAddPathwaysData()

• read_david_data_file()