peaks.gr


An example data set containing cleavage sites (peaks) from getPeaks


datasets

The package implements GUIDE-seq analysis workflow
including functions for obtaining unique insertion
sites (proxy of cleavage sites), estimating the locations
of the insertion sites, aka, peaks, merging estimated insertion
sites from plus and minus strand, and performing off target
search of the extended regions around insertion sites.

Lihua Julie Zhu

GUIDEseq

GUIDE-seq analysis pipeline

peaks.gr function

<dl>
        SNratio (signal noise ratio), p-value, and option adjusted p-value </dl> 

Format

http://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1695644

Source

An example data set containing cleavage sites (peaks) from getPeaks

example cleavage sites

GRanges with count (peak height), bg (local background),
       SNratio (signal noise ratio), p-value, and option adjusted p-value

peaks.gr: example cleavage sites

Description

Usage

Arguments

Value

Format

Source

Examples