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GenCAT (version 1.0.2)

Genetic Class Association Testing

Description

Implementation of the genetic class level association testing (GenCAT) method from SNP level association data. Refer to: "Qian, J., Reed, E., Nunez, S., Qu, L., Reilly, M., Foulkes, A. (2016) Testing class-level genetic associations using single-element summary statistics. (Under review).".

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Version

Install

install.packages('GenCAT')

Monthly Downloads

10

Version

1.0.2

License

GPL-2

Maintainer

Eric Reed

Last Published

February 17th, 2016

Functions in GenCAT (1.0.2)

GenCAT_manhattan

Create Manhattan Plot of GenCAT Results
coords

Protein coding gene coordinates (GRCh37/hg19)
CardioData

GWAS data from CARDIoGRAM on CAD
GenCAT

Running GenCAT
map2class

Mapping SNPs to Classes
geno

Genotype Data
GenCAT-package

GenCAT
CardioMapped

CARDIoGRAM data mapped to classes