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GenCAT (version 1.0.3)

Genetic Class Association Testing

Description

Implementation of the genetic class level association testing (GenCAT) method from SNP level association data. Refer to: "Qian J, Nunez S, Reed E, Reilly MP, Foulkes AS (2016) A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci. PLoS ONE 11(2): e0148218".

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Version

Install

install.packages('GenCAT')

Monthly Downloads

10

Version

1.0.3

License

GPL-2

Maintainer

Eric Reed

Last Published

June 10th, 2016

Functions in GenCAT (1.0.3)

geno

Genotype Data
GenCAT_manhattan

Create Manhattan Plot of GenCAT Results
CardioMapped

CARDIoGRAM data mapped to classes
map2class

Mapping SNPs to Classes
CardioData

GWAS data from CARDIoGRAM on CAD
GenCAT-package

\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("#1")}GenCATGenetic Class Association Testing
GenCAT

Running GenCAT
coords

Protein coding gene coordinates (GRCh37/hg19)