CardioData


This is a subset GWAS results for risk of CAD.


datasets

Implementation of the genetic class level association testing (GenCAT) method from SNP level association data. Refer to: "Qian J, Nunez S, Reed E, Reilly MP, Foulkes AS (2016) <DOI:10.1371/journal.pone.0148218> A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci. PLoS ONE 11(2): e0148218".

Eric Reed

GenCAT

Genetic Class Association Testing

CardioData function

A data frame with 95157 observations on the following 6 variables.
  <dl>
    <dt><code>SNP</code></dt><dd>a character vector</dd> <dt><code>effect_allele</code></dt><dd>a character vector</dd> <dt><code>other_allele</code></dt><dd>a character vector</dd> <dt><code>testStat</code></dt><dd>a numeric vector</dd> <dt><code>chr</code></dt><dd>a numeric vector</dd> <dt><code>position</code></dt><dd>a numeric vector</dd> </dl> 

Format

<a href="/link/www.CARDIOGRAMPLUSC4D.ORG?package=GenCAT&version=1.0.3" data-mini-rdoc="GenCAT::www.CARDIOGRAMPLUSC4D.ORG">www.CARDIOGRAMPLUSC4D.ORG</a>.

Source

<a href = 'www.CARDIOGRAMPLUSC4D.ORG'>www.CARDIOGRAMPLUSC4D.ORG</a>.

CardioData: GWAS data from CARDIoGRAM on CAD

Description

Usage

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Format

Source

Details

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Examples