CardioMapped


CARDIoGRAM test statistics mapped to protein coding genes on chromosomes 13, 14, and 15.


datasets

Implementation of the genetic class level association testing (GenCAT) method from SNP level association data. Refer to: "Qian J, Nunez S, Reed E, Reilly MP, Foulkes AS (2016) <DOI:10.1371/journal.pone.0148218> A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci. PLoS ONE 11(2): e0148218".

Eric Reed

GenCAT

Genetic Class Association Testing

CardioMapped function

A data frame with 98582 observations on the following 7 variables.
  <dl>
    <dt><code>SNP</code></dt><dd>a character vector</dd> <dt><code>effect_allele</code></dt><dd>a character vector</dd> <dt><code>other_allele</code></dt><dd>a character vector</dd> <dt><code>testStat</code></dt><dd>a numeric vector</dd> <dt><code>chr</code></dt><dd>a numeric vector</dd> <dt><code>position</code></dt><dd>a numeric vector</dd> <dt><code>class</code></dt><dd>a character vector</dd> </dl> 

Format

<a href="/link/www.CARDIOGRAMPLUSC4D.ORG?package=GenCAT&version=1.0.3" data-mini-rdoc="GenCAT::www.CARDIOGRAMPLUSC4D.ORG">www.CARDIOGRAMPLUSC4D.ORG</a>.

Source

<a href = 'www.CARDIOGRAMPLUSC4D.ORG'>www.CARDIOGRAMPLUSC4D.ORG</a>.

CardioMapped: CARDIoGRAM data mapped to classes

Description

Usage

Arguments

Format

Source

Details

References

Examples