GenCAT (version 1.0.3)

coords: Protein coding gene coordinates (GRCh37/hg19)

Description

Protein coding gene coordinates adapted from UCSC Genomes Browser KnownCanonical track.

Usage

data("coords")

Format

A data frame with 18054 observations on the following 4 variables.

chr

a numeric vector

start

a numeric vector

stop

a numeric vector

class

a character vector

Source

https://genome.ucsc.edu/cgi-bin/hgTables

Details

These protein coding gene coordinates were adapted from the KnownCanonical track from the UCSC Genome Browser, GRCH37

References

Rosenbloom, K. R., Armstrong, J., Barber, G. P., Casper, J., Clawson, H., Diekhans, M., Dreszer, T. R., Fujita, P. A., Guruvadoo, L., Haeussler, M., Harte, R. A., Heitner, S., Hickey, G., Hinrichs, A. S., Hubley, R., Karolchik, D., Learned, K., Lee, B. T., Li, C. H., Miga, K.H. , Nguyen, N., Paten, B., Raney, B.J., Smit, A. F., Speir, M. L., Zweig, A. S., Haussler, D., Kuhn, R. M., Kent, W.J. (2015) The UCSC Genome Browser database: 2015 update. Nucleic Acids Res. Jan;43(Database issue):D670-81.

Examples

data("coords")