GeneAnswers (version 2.14.0)

DO: Several data objects related with DO (Disease Ontology) and its mapping to genes

Description

Several data objects related with DO (Disease Ontology) and its mapping to genes

Usage

data(DO)

Details

The data file "DO.rda" includes five datasets:

DO.graph.gene: a graphNEL object, which shows the ontology relations of DO DO.graph.closure.gene: a graphNEL object, whose edges represent the link between a DO term and its offspring ontology terms. Only the DO terms with gene mappings were included. DO2gene.map: a list show the mapping from DOIDs to genes gene2DO.map: a list show the mapping from genes to DOIDs DO.terms: a named character vector. Its names are DOIDs and elements are DO.terms

Examples

data(DO)

datasets <- c("DO.graph.gene", "DO.graph.closure.gene", "DO2gene.map", "gene2DO.map", "DO.terms")
# check the existence of these datasets:
sapply(datasets, exists)