Mapping Category IDs to Terms
Make a concept-gene cross tabulation
Sort enrichmentInfo of a GeneAnswers instance
Get homologous genes of given genes
Get Pathway names of given KEGG IDs
Generate top concepts-genes table
Human gene interaction matrix
map Entrez gene IDs to caBIO gene IDs
Get DOLite Terms of Given DOLite IDs
Generate a multigroup Concepts-genes analysis report
Mapping homogenes for a GeneAnswers instance
Get Pathway names of given REACTOME PATH_DB IDs
Generate Concept-gene network
Present top KEGG enrichment test information with genes
Retrieve KEGG categories containing given genes
Example mouse expression data
Class GeneAnswers: contain and describe the relationship between given gene data and specified category
Present top CABIO.PATH enrichment test information with genes
Concept-Gene Networking Plotting
Concept-Gene Networking Plotting
map caBIO gene IDs to Entrez gene IDs
build and display a network for given IDs
Fly gene interaction matrix
Retrieve categories containing given genes
Make GeneAnswers Instance readable
Concept-Gene Networking Plotting
Present top enrichment test information
Disease Ontology Annotation Vector
Search specified information from Entrez site
Plot Category Links
retrieve parents or children GO IDs for given GO IDs
Convert entrez gene IDs to gene symbols
Retrieve REACTOME path categories containing given genes
retrieve direct interacted nodes for given IDs and interaction Matrix
Retrieve caBIO path categories containing given genes
Pie Chart and Bar Plots
Example human expression data
Get Pathway names of given REACTOME PATH_DB IDs
Present top GO enrichment test information
Present top GO enrichment test information with genes
Mouse gene interaction matrix
Disease Ontology Annotation List
Get GO list of given genes
geneAnswersConceptRelation
Display a network related to given concepts for a GeneAnswers instance
Present top KEGG enrichment test information
Rat gene interaction matrix
Present top REACTOME.PATH enrichment test information with genes
retrieve multilayer interacted nodes for given IDs and interaction Matrix
Several data objects related with DO (Disease Ontology) and its mapping to genes
Integrated Interpretation of Genes
Build an object of a GeneAnswers class
Generate Concept-Gene Tabulates
getListGIF
Example human expression data
Example human gene data
Make pie chart and bar plot
Example mouse gene data
Present top enrichment test information with genes
build and display a network for given IDs and interaction Matrix
Present top DOLITE enrichment test information with genes
Present top CABIO.PATH enrichment test information
Obtain the total number of genes in the given annotation library
Present top DOLITE enrichment test information
Present top REACTOME.PATH enrichment test information