getPATHList: Retrieve KEGG categories containing given genes
Description
Function to retrieve KEGG category IDs containing given genes.
Usage
getPATHList(geneVector, lib)
Arguments
geneVector
an Entrez gene IDs vector
lib
annotation library to be used to retrieve KEGG IDs.
Value
return a KEGG genes ID list, names of the list are KEGG IDs and elements are genes IDs.
Details
The current version only supports Bioconductor team maintained annotation libraries, like 'org.Bt.eg.db', 'org.Ce.eg.db', 'org.Cf.eg.edu', 'org.Dm.eg.db', 'org.Dr.eg.db', 'org.EcK12.eg.db', 'org.EcSakai.eg.db', 'org.Gg.eg.db', 'org.Hs.eg.db', 'org.Mm.eg.db', 'org.Rn.eg.db' and 'org.Ss.eg.db'.
References
Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10