getcaBIOPATHList: Retrieve caBIO path categories containing given genes
Description
Function to retrieve caBIO pathway IDss containing the given genes. This function is not supported starting this version due to the termination of the caBig project.
Usage
getcaBIOPATHList(lls)
Arguments
lls
an Entrez gene IDs vector
Value
return an Entrez genes ID list, names of the list are caBIO pahtway IDs and elements are Entrez gene IDs.
Details
The given gene IDs should be Entrez gene IDs. And the return list also only contains Entrez gene IDs besides caBIO pathway IDs.
References
Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10