getcaBIOPATHTerms: Get Pathway names of given REACTOME PATH_DB IDs
Description
Function to map given caBIO pathway IDs to Pathway names. This function is not supported starting this version due to the termination of the caBig project.
Usage
getcaBIOPATHTerms(caBIOPATHIDs)
Arguments
caBIOPATHIDs
a caBIO pathway IDs vector
Value
return the caBIO pathway terms of given caBIO pathway IDs.
Details
caBIO(Cancer Bioinformatics Infrastructure Objects, https://cabig.nci.nih.gov/tools/cabio) integrates three pathway databases from NCI-Nature curated, Biocarta and Reactome. Therefore, terms
could be same from different databases and the source library is added the end of each term.
References
Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10