Disease Ontology Annotation List
Sort enrichmentInfo of a GeneAnswers instance
Several data objects related with DO (Disease Ontology) and its mapping to genes
Generate Concept-gene network
Retrieve KEGG categories containing given genes
Get Pathway names of given KEGG IDs
retrieve direct interacted nodes for given IDs and interaction Matrix
Convert entrez gene IDs to gene symbols
Present top DOLITE enrichment test information
Present top DOLITE enrichment test information with genes
Present top CABIO.PATH enrichment test information with genes
build and display a network for given IDs and interaction Matrix
Make pie chart and bar plot
Build an object of a GeneAnswers class
retrieve multilayer interacted nodes for given IDs and interaction Matrix
retrieve parents or children GO IDs for given GO IDs
Concept-Gene Networking Plotting
Disease Ontology Annotation Vector
Present top REACTOME.PATH enrichment test information
Present top REACTOME.PATH enrichment test information with genes
Concept-Gene Networking Plotting
Generate Concept-Gene Tabulates
Retrieve caBIO path categories containing given genes
Get Pathway names of given REACTOME PATH_DB IDs
getListGIF
Get homologous genes of given genes
map caBIO gene IDs to Entrez gene IDs
Plot Category Links
map Entrez gene IDs to caBIO gene IDs
Make a concept-gene cross tabulation
Retrieve categories containing given genes
Mapping Category IDs to Terms
Get DOLite Terms of Given DOLite IDs
Get GO list of given genes
Example human gene data
Mouse gene interaction matrix
Search specified information from Entrez site
Present top CABIO.PATH enrichment test information
Example mouse expression data
Example mouse gene data
Present top GO enrichment test information
Present top GO enrichment test information with genes
Pie Chart and Bar Plots
Fly gene interaction matrix
Generate top concepts-genes table
Concept-Gene Networking Plotting
geneAnswersConceptRelation
Display a network related to given concepts for a GeneAnswers instance
build and display a network for given IDs
Human gene interaction matrix
Example human expression data
Rat gene interaction matrix
Class GeneAnswers: contain and describe the relationship between given gene data and specified category
Integrated Interpretation of Genes
Example human expression data
Present top KEGG enrichment test information
Present top KEGG enrichment test information with genes
Mapping homogenes for a GeneAnswers instance
Make GeneAnswers Instance readable
Retrieve REACTOME path categories containing given genes
Get Pathway names of given REACTOME PATH_DB IDs
Generate a multigroup Concepts-genes analysis report
Present top enrichment test information
Obtain the total number of genes in the given annotation library
Present top enrichment test information with genes