GeneReg (version 1.1.2)

timedelay.lm.batch: time delay linear model batch

Description

Batch usage of time delay linear model.

Usage

timedelay.lm.batch(bspline.data, expr.data, regulator.list, 
target.list=rownames(bspline.data), ...)

Arguments

bspline.data

output of ts.bspline, an interpolated expression matrix with genes in the rows, predicted time points in the columns

expr.data

an observed expression matrix with genes in the rows, predicted time points in the columns

regulator.list

a candidate pool of potential regulators

target.list

the list of target genes that will be investigated

...

Additional arguments, passed to timedelay.lm

References

Tao Huang, Lei Liu, Ziliang Qian, Kang Tu, Yixue Li, Lu Xie: Using GeneReg to construct time delay gene regulatory networks. BMC Res Notes 2010, 3(1):142. http://www.biomedcentral.com/1756-0500/3/142