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GeneReg (version 1.1.2)

Construct time delay gene regulatory network

Description

GeneReg is an R package for inferring time delay gene regulatory network using time course gene expression profiles. The main idea of time delay linear model is to fit a linear regression model using a set of putative regulators to estimate the transcription pattern of a specific target gene.

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Install

install.packages('GeneReg')

Monthly Downloads

33

Version

1.1.2

License

LGPL

Maintainer

Tao Huang

Last Published

October 29th, 2012

Functions in GeneReg (1.1.2)

plot

Plot gene regulatory network
plot.GeneReg

Plot gene regulatory network
mut.expr.data

Time course cell cycle dataset of cyclin-mutant cells
wt.expr.data

Time course cell cycle dataset of wild-type cells
timedelay.lm

time delay linear model
GeneReg-package

Construct time delay gene regulatory network
timedelay.univariate.lm

Internal function for time delay linear model
timedelay.lm.batch

time delay linear model batch
tf.list

The candidate pool of potential regulators
ts.bspline

B spline interpolation