
    A matrix of genotypes, where each column is one individual, each row is one marker, and marker values are 1, 0, or -1, or NA, where 0 represents a heterozygous marker, and NA represents missing data. Note that this coding is different from the earlier PicCalc, which cannot handle heterozygous markers.  All data in this matrix must be numeric.


data


This function calculates the Expected Heterozygosity (HET; called PIC in earlier versions and in the paper describing this package) of a set of genotypes.


 misc 

Finds subsets of sets of genotypes with a high Heterozygosity, and Mean of Transformed Kinships (MTK), measures that can indicate a subset would be beneficial for rare-trait discovery and genome-wide association scanning, respectively.

HET: Heterozygosity Calculator

Description

Usage

Arguments

Value

Examples