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GeneticSubsetter (version 0.8)

Identify Favorable Subsets of Germplasm Collections

Description

Finds subsets of sets of genotypes with a high Heterozygosity, and Mean of Transformed Kinships (MTK), measures that can indicate a subset would be beneficial for rare-trait discovery and genome-wide association scanning, respectively.

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Version

Install

install.packages('GeneticSubsetter')

Monthly Downloads

202

Version

0.8

License

GPL (>= 2)

Maintainer

Ryan C Graebner

Last Published

October 25th, 2016

Functions in GeneticSubsetter (0.8)

genotypes.poly

Sample Barley Genotypes
CoreSetter

Genotype Subsetting
Mat

Kinship Matrix Creator
CoreSetterCombined

Genotype Subsetting-Alternative Method
CoreSetterPoly

Genotype Subsetting for Autopolyploids and Polymorphic Markers
CoreSetOptimizer

Subset Optimization
genotypes

Sample Barley Genotypes
HET

Heterozygosity Calculator
GeneticSubsetter

Genetic Subsetter
MTK

MTK calculator
MtkCalc

MTK calculator (Depreciated)
SubsetterMTK

Genotype Subsetting with PIC - Method One (Depreciated)
PicCalc

PIC Calculator (Depreciated)
SubsetterPIC

Genotype Subsetting with PIC - Method One (Depreciated)