MtkCalc


    A matrix of genotypes, that includes all genotypes that should be used to create the kinship matrix, where each column is one individual, each row is one marker, and marker values are 1, 0, or -1, where 0 represents missing data.  All data in this matrix must be numeric.


genos

A vector of genotype names for which to calculate MTK.

subset

The transformation that should be made to the kinship matrix. If power=1, the kinship matrix is not transformed, if power=2, the kinship matrix is squared, etc. When the power is higher, this function preferentially eliminates genotypes that are closely related to other specific genotypes.

power


***This function has been superseded by MTK.


 misc 

Finds subsets of sets of genotypes with a high Heterozygosity, and Mean of Transformed Kinships (MTK), measures that can indicate a subset would be beneficial for rare-trait discovery and genome-wide association scanning, respectively.

Ryan C Graebner

GeneticSubsetter

Identify Favorable Subsets of Germplasm Collections

MtkCalc function


    A vector of genotype names for which to calculate MTK.




    The transformation that should be made to the kinship matrix. If power=1, the kinship matrix is not transformed, if power=2, the kinship matrix is squared, etc.  When the power is higher, this function preferentially eliminates genotypes that are closely related to other specific genotypes.



MtkCalc: MTK calculator (Depreciated)

Description

Usage

Arguments

Value

Examples