Create_Dataset

Create SigStren and Contrast variables from luminescence values of probeset A and B of each markers and return a dataframe to be used for clustering or save the result if a saving name is given

Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids.
Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and
Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().

Julien Roche

GenoTriplo

Genotyping Triploids (or Diploids) from Luminescence Data

Florence Phocas

Mathieu Besson

Pierre Patrice

Marc Vandeputte

François Allal

Pierrick Haffray

Create_Dataset function

<dl><dt>data</dt>
<dd>dataframe with probeset_id as first variable (markername finishing by -A or -B depending on the probeset) and individuals as variable with luminescence values for each probeset (dataset created by bash code by shiny app)</dd>
<dt>save_name</dt>
<dd>saving name</dd></dl>

Arguments

Create dataset in appropriate format — Create_Dataset

<dl>

<dt>data</dt>
<dd>dataframe with probeset_id as first variable (markername finishing by -A or -B depending on the probeset) and individuals as variable with luminescence values for each probeset (dataset created by bash code by shiny app)</dd>


<dt>save_name</dt>
<dd>saving name</dd>

</dl>

Create_Dataset: Create dataset in appropriate format

Description

Usage

Value

Arguments