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GeoDE (version 1.0)

A geometrical Approach to Differential expression and gene-set enrichment

Description

Given expression data this package calculate a multivariate geometrical characterization of the differential expression and can also perform gene-set enrichment.

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Version

Install

install.packages('GeoDE')

Monthly Downloads

7

Version

1.0

License

GPL-2

Maintainer

Neil Clark

Last Published

July 31st, 2014

Functions in GeoDE (1.0)

gmt

The currently loaded gmtfile
GeoDE-package

Differential Expression and Enrichment Analysis with (Geo)metrical(D)ifferential(E)expression.
example_sampleclass

Example Sample Class Factor
AllGMTfiles

The gmt files included in GeoDE
example_gammas

Example Gamma Value
example_expression_data

Example Expression Data