generate_enzyme_file

enzyme

<p>the restriction enzyme cutting sites</p>

enzymesite

chrom_file

enzymedir

<p>5' overhangs on the DNA resulted from the cutting</p>

enzymeoverhangs5

genomeName

 ~kwd1 

 ~kwd2 

Hi-C dataset processing algorithm introduced by Chao He (2016) <doi.org/10.1101/083576>.
The optimized and flexible pipeline for analyzing the
folding of whole chromosome and interactions between some
specific sites from the Hi-C raw sequencing reads to the
partially processed datasets. The other complex genetic and
epigenetic datasets from public sources such as GWAS, ENCODE
consortiums etc. will also easily be integrated into HBP,
hence the final output results of HBP could provide a
comprehensive in-depth understanding for the specific
chromatin interactions, potential molecular mechanisms and
biological significance. We believe that HBP is a reliable
tool for the rapidly analysis of Hi-C data and will be very
useful for a wide range of researchers, particularly those
who lack of background in computational biology.

generate_enzyme_file: generate enzyme file

Description

Arguments

Details