# HH v3.1-19

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## Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

## Functions in HH

Name | Description | |

ResizeEtc.likertPlot | Display multiple independent trellis objects, representing likert plots, on the same coordinated scale. | |

emptyMainLeftAxisLeftStripBottomLegend | Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items. | |

panel.likert | Panel functions for likert that include a stackWidth argument | |

residVSfitted | Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat | |

Discrete4 | Discrete with four levels color dataset. | |

anovaMean | ANOVA table from the group sample sizes, means, and standard deviations. | |

as.matrix.listOfNamedMatrices | Convert a list of matrices to a single matrix | |

as.multicomp | Support functions in R for MMC (mean--mean multiple comparisons) plots. | |

seqplot | Time series plot. | |

positioned-class | Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor. | |

cp.calc | Rearranges and improves the legibility of the output from the stepwise function in S-Plus. | |

as.vector.trellis | Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object. | |

diag.maybe.null | Returns a value for the diagonal of NA and NULL arguments. | |

anova.ancovaplot | ANOVA table for a c("ancovaplot","trellis") object. | |

glhtWithMCP.993 | Retain averaging behavior that was previously available in glht. | |

combineLimits.trellisvector | Combine limits on a one-dimensional trellis object. | |

grid.yaxis.hh | make x- and y-axis labels | |

col3x2 | col3x2 color dataset | |

ancovaplot | Analysis of Covariance Plots | |

interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

ancova-class | Class "ancova" Analysis of Covariance | |

AEdotplot.data.frame | AE (Adverse Events) dotplot of incidence and relative risk, support functions | |

strip.xysplom | strip function that is able to place the correlation or regression coefficient into the strip label. | |

pdiscunif | Discrete Uniform Distribution | |

mcalinfct | MCA multiple comparisons analysis (pairwise) | |

LikertPercentCountColumns | Display likert plots with percents in the first column of panels and counts in the second column of panels. | |

likertColor | Selection of colors for Likert plots. | |

lm.case | case statistics for regression analysis | |

panel.bwplott | Extension to S-Plus trellis to allow transposed plots. | |

logit | Logistic and odds functions and their inverses. | |

dchisq.intermediate | Intermediate f and chisq functions to simplify writing for both R and S-Plus. | |

diagplot5new | Transpose of ECDF for centered fitted values and residuals from a linear model. | |

hov | Homogeneity of Variance | |

xysplom | scatterplot matrix with potentially different sets of variables on the rows and columns. | |

HHscriptnames | Find absolute pathname of a script file for the HH book in the HH package. | |

HH.regsubsets | Display tabular results for Best Subsets Regression. | |

ancova | Compute and plot oneway analysis of covariance | |

plot.mmc.multicomp | MMC (Mean--mean Multiple Comparisons) plot. | |

NTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial. | |

ladder | Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x. | |

extra | Miscellaneous functions that I wish were in or consistent between S-Plus and R. | |

HH-package | Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland | |

lmatRows | Find the row numbers in the lmat corresponding to the focus factor. | |

arma.loop | Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs. | |

residual.plots | Residual plots for a linear model. | |

aovSufficient | Analysis of variance from sufficient statistics for groups. | |

ae.dotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

diagQQ | QQ plot of regression residuals. | |

ci.plot | Plot confidence and prediction intervals for simple linear regression | |

intxplot | Interaction plot, with an option to print standard error bars. | |

panel.axis.right | Right-justify right-axis tick labels. | |

npar.arma | Count the number of parameters in an ARIMA model specification. | |

do.formula.trellis.xysplom | Interprets model formulas for xysplom and extended bwplots | |

GSremove | Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet | |

interval | Prediction and Confidence Intervals for glm Objects | |

print.TwoTrellisColumns | Print two conformable trellis plots in adjacent columns with user control of widths. | |

latticeresids | Subroutine used by residual.plots.lattice | |

summary.arma.loop | summary and print and subscript methods for tsdiagplot and related objects. | |

likert | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids. | |

mmc | MMC (Mean--mean Multiple Comparisons) plots. | |

objip | loop through all attached directories looking for pattern | |

OneWayVarPlot | Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model. | |

axis.i2wt | specialized axis function for interaction2wt. | |

lm.regsubsets | Evaluate lm model with highest adjusted $R^2$. | |

useOuterStripsT2L1 | Three-factor generalization of latticeExtra::useOuterStrips | |

interaction.positioned | interaction method for positioned factors. | |

hhpdf | R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex | |

col.hh | Initializing Trellis Displays | |

NormalAndTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals. | |

cplx | Generate a sequence spanning the xlim of a lattice window. | |

sufficient | Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors. | |

arima.diag.hh | Repair design error in S-Plus arima.diag | |

likertMosaic | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style. | |

hovBF | Homogeneity of Variance: Brown--Forsyth method | |

regr1.plot | plot x and y, with optional straight line fit and display of squared residuals | |

AEdotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

vif | Calculate the Variance Inflation Factor | |

export.eps | Exports a graph to an EPS file. | |

panel.interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

panel.ci.plot | Default Panel Function for ci.plot | |

mmc.mean | MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design. | |

datasets | Datasets for Statistical Analysis and Data Display, Heiberger and Holland | |

lmatPairwise | lmatPairwise | |

mmcplot | MMC (Mean-mean Multiple Comparisons) plots in lattice. | |

normalApproxBinomial | Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals. | |

position | Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined. | |

lmplot | Four types of residual plots for linear models. | |

multicomp.order | Update a multicomp object by ordering its contrasts. | |

OddsRatio | Calculate or plot the odds ratio for a 2x2 table of counts. | |

orthog.complete | Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns. | |

tsdiagplot | Times series diagnostic plots for a structured set of ARIMA models. | |

partial.corr | partial correlations | |

mmcPruneIsomeans | MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor. | |

as.likert | Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data. | |

panel.acf | Panel functions for tsdiagplot. | |

print.latticeresids | Print a latticeresids object. | |

panel.cartesian | trellis panel function, with labeled rows and columns and without strip labels. | |

print.tsdiagplot | Print a "tsdiagplot" object. | |

rbind.trellis | Extend matrix reshaping functions to trellis objects. | |

hh | Resolve filenames relative to the HH directory. | |

panel.bwplot.intermediate.hh | Panel functions for bwplot. | |

panel.confintMMC | Confidence interval panel for MMC tiebreaker plots, or confidence interval plot. | |

panel.bwplot.superpose | Panel function for bwplot that displays an entire box in the colors coded by groups. | |

panel.pairs.hh | Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments. | |

norm.curve | plot a normal or a t-curve with both x and z axes. | |

panel.xysplom | panel method for xysplom. | |

panel.dotplot.tb | Dotplot with evenly spaced tiebreakers. | |

matrix.trellis | Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work. | |

showHex | Show numbers in binary and hex format | |

print.NormalAndTplot | Print method for Normal and t plots from NTplot. | |

mmcAspect | Control aspect ratio in MMC plots to maintain isomeans grid as a square. | |

perspPlane | Helper functions for regr2.plot | |

plot.multicomp | Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons. | |

panel.isomeans | isomeans grid for MMC plots. | |

strip.background0 | Turn off the coloring in the trellis strip labels. Color 0 is the background color. | |

mmcisomeans | Functions used by mmcplot. | |

X.residuals | Residuals from the regression of each column of a data.frame against all the other columns. | |

F.curve | plot a chisquare or a F-curve. | |

gof.calculation | Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus. | |

residual.plots.lattice | Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns. | |

legendGrob2wt | place separate keys to the left of each row of a trellis | |

multicomp.reverse | Force all comparisons in a "multicomp" object to have the same sign. | |

push.vp.hh | push and pop a grid viewport, turn clipping off, change scale. | |

seqplot.forecast | seqplot with confidence bands for the forecast region. | |

tsacfplots | Coordinated time series and ACF and PCF plots. | |

plot.hov | Homogeneity of Variance Plot | |

ResizeEtc | Display multiple independent trellis objects on the same coordinated scale. | |

pyramidLikert | Print a Likert plot as a Population Triangle | |

regrresidplot | Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares. | |

regr2.plot | 3D plot of z against x and y, with regression plane fit and display of squared residuals. | |

if.R | Conditional Execution for R or S-Plus | |

defunct | Defunct Functions in Package 'HH' | |

bivariateNormal | Plot the bivariate normal density using wireframe for specified rho. | |

NormalAndTPower | Construct a power graph based on the NTplot. | |

resid.squares | plot squared residuals in inches to match the y-dimension | |

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## Last month downloads

## Details

Type | Package |

Date | 2015-06-09 |

License | GPL (>= 2) |

NeedsCompilation | no |

Packaged | 2015-06-10 20:59:32 UTC; rmh |

Repository | CRAN |

Date/Publication | 2015-06-12 06:43:22 |

imports | abind , colorspace , Hmisc , leaps , RColorBrewer , reshape2 , Rmpfr , shiny , vcd |

depends | base (>= 3.0.2) , grid , gridExtra , lattice , latticeExtra , multcomp , R (>= 3.0.2) , stats |

suggests | car , methods , mvtnorm , Rcmdr , RcmdrPlugin , RcmdrPlugin.HH , TeachingDemos |

Contributors | Richard Heiberger |

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